SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    263981, 264973, 264102, 366828, 371861, 
    366833, 366771, 371878, 366815, 371873, 
    366690, 371884, 371890, 371868, 366760, 
    371898, 371895, 366821, 371902
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00187

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "53.27"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "usergroup",
        "used_key_parts": [
          "product_id",
          "usergroup_id",
          "lower_limit"
        ],
        "key_length": "9",
        "rows_examined_per_scan": 38,
        "rows_produced_per_join": 38,
        "filtered": "100.00",
        "cost_info": {
          "read_cost": "45.67",
          "eval_cost": "7.60",
          "prefix_cost": "53.27",
          "data_read_per_join": "2K"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`webmarco`.`cscart_product_prices`.`lower_limit` = 1) and (`webmarco`.`cscart_product_prices`.`product_id` in (263981,264973,264102,366828,371861,366833,366771,371878,366815,371873,366690,371884,371890,371868,366760,371898,371895,366821,371902)) and (`webmarco`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
263981 31.87000000
264102 35.30000000
264973 33.45000000
366690 89.00000000
366760 102.00000000
366771 96.00000000
366815 119.90000000
366821 66.00000000
366828 69.00000000
366833 125.00000000
371861 60.00000000
371868 60.00000000
371873 60.00000000
371878 60.00000000
371884 60.00000000
371890 60.00000000
371895 60.00000000
371898 60.00000000
371902 60.00000000