SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    286494, 286498, 286496, 286495, 309535, 
    309536, 309538, 371820, 309533, 309537, 
    309534, 309532, 371795, 372036, 379725, 
    372031, 379721, 372033, 372029, 371818
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00136

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "56.07"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "usergroup",
        "used_key_parts": [
          "product_id",
          "usergroup_id",
          "lower_limit"
        ],
        "key_length": "9",
        "rows_examined_per_scan": 40,
        "rows_produced_per_join": 40,
        "filtered": "100.00",
        "cost_info": {
          "read_cost": "48.07",
          "eval_cost": "8.00",
          "prefix_cost": "56.07",
          "data_read_per_join": "2K"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`webmarco`.`cscart_product_prices`.`lower_limit` = 1) and (`webmarco`.`cscart_product_prices`.`product_id` in (286494,286498,286496,286495,309535,309536,309538,371820,309533,309537,309534,309532,371795,372036,379725,372031,379721,372033,372029,371818)) and (`webmarco`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
286494 140.00000000
286495 80.00000000
286496 140.00000000
286498 80.00000000
309532 28000.00000000
309533 20000.00000000
309534 24000.00000000
309535 11500.00000000
309536 33000.00000000
309537 12500.00000000
309538 13000.00000000
371795 95.00000000
371818 33.00000000
371820 54.00000000
372029 65.50000000
372031 81.00000000
372033 141.50000000
372036 95.00000000
379721 170.00000000
379725 210.00000000